PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG235200.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 213aa    MW: 23671.3 Da    PI: 9.1927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG235200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-1754100455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Pavir.6NG235200.4.p  54 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 100
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.45E-1746104No hitNo description
SuperFamilySSF474591.15E-2048109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.4825099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-2154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1554100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1756105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGDPGCRVTA ATSRKGRGCV ETTRIVGDAE CEETEETKSL RRCGTKRRTR AAEVHNLSER  60
RRRDRINEKM RALQELIPHC NKTDKASILD ETIEYLKSLQ MQVQIIGMTS GMAPMMFPGA  120
HQFMSPMALG MNSACITAAQ GLSQMPRLPY MNLPLPNHIP LNSSPAMNPI NSPSIANEMQ  180
NVHLMEASNH FLHPRWRANI GTSGTRNPCL WT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14562KRRTRAAEVHNLSERRRR
25863ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.420240.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704122.11e-105PREDICTED: transcription factor PIF4-like isoform X2
SwissprotQ84LH81e-33PIF5_ARATH; Transcription factor PIF5
TrEMBLK4AAB21e-104K4AAB2_SETIT; Uncharacterized protein
STRINGSi035818m1e-104(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.48e-35phytochrome interacting factor 3-like 6